RnoEX0101542 @ rn6
Exon Skipping
Gene
ENSRNOG00000051867 | Zfp600
Description
zinc finger protein 600 [Source:RGD Symbol;Acc:9286049]
Coordinates
chr11:38728208-38761085:+
Coord C1 exon
chr11:38728208-38728358
Coord A exon
chr11:38737830-38737913
Coord C2 exon
chr11:38761038-38761085
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTGATGTGGTATGCTCACAGGAA
3' ss Score
6.2
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
GCATCATTTATTTTTGTTCCATGAAAAGTTCTGGGTGCTTTCTGAAGACTCTTTCCCATATGCAAGGGTCACACTCCTCAGCCAGTTCTGCTCACCTATGAATCTGAGAGCCCTGGATGGTGAAGACAGGAAACTGTAGCAACTTATTCAG
Seq A exon
GAAGAATGAAACATCTAGACTGTGTTCAGAAGACATTGTACATGGATGTGATGTTGGAGAATTATAACAATCTATTTTTTGTAG
Seq C2 exon
AGAAGAGTAACAAGAAGAATGAATGCTTCTCTTGAAAATGCTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051867_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.200
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGAAAAGTTCTGGGTGCT
R:
TGAGGAGCATTTTCAAGAGAAGCA
Band lengths:
181-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]