HsaEX0073528 @ hg38
Exon Skipping
Gene
ENSG00000075407 | ZNF37A
Description
zinc finger protein 37A [Source:HGNC Symbol;Acc:HGNC:13102]
Coordinates
chr10:38096574-38115290:+
Coord C1 exon
chr10:38096574-38096632
Coord A exon
chr10:38114755-38114881
Coord C2 exon
chr10:38115195-38115290
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCAAAATTGTGATTTTCCAGGGA
3' ss Score
5.87
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
CTACACCCTCACAGTTTGCTCTGCTCTTCCAACACCAGTGGAAGATGATCACATCCCAG
Seq A exon
GGATCAGTGTCGTTTAGGGATGTGACTGTGGGCTTCACTCAAGAGGAGTGGCAGCATCTGGACCCTGCTCAGAGGACCCTGTACAGGGATGTGATGCTGGAGAACTACAGCCACCTTGTCTCAGTAG
Seq C2 exon
GGTATTGCATTCCTAAACCAGAAGTGATTCTCAAGTTGGAGAAAGGCGAGGAGCCATGGATATTAGAGGAAAAATTTCCAAGCCAGAGTCATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075407_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACACCCTCACAGTTTGCTCT
R:
CAGATGACTCTGGCTTGGAAA
Band lengths:
154-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development