RnoEX6063501 @ rn6
Exon Skipping
Gene
ENSRNOG00000001099 | Rbak
Description
RB-associated KRAB zinc finger [Source:RGD Symbol;Acc:1562875]
Coordinates
chr12:13430025-13438607:+
Coord C1 exon
chr12:13430025-13430083
Coord A exon
chr12:13438059-13438185
Coord C2 exon
chr12:13438512-13438607
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTCTGATCGTGTCATTGCAGGGC
3' ss Score
6.99
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GTCAGTCGTCAGTGTTGTCTACGGTTTCCCAAGAGGAGCAAAAGATGAGCATATCAAAG
Seq A exon
GGCCCACTGTCATTCAAGGATGTGGCTGTGGCCTTCTCCCAGGAGGAGTGGCAGCAGCTGGACTCTGAGGAGAGGACGACCTACCGGGATGTGATGCTGGAGACCTACAGCAACCTCGTCTCCGTGG
Seq C2 exon
GGTATGATGTCACCAAGCCAAACGTGATTATTAAGTTGGAACAGGGAGAAGAACCCTGGACAGTGGAAGGTGACCGCCATGCTAAGAGGCATTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001099-'1-4,'1-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.134 C2=0.295
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCGTCAGTGTTGTCTACGG
R:
CCTCTTAGCATGGCGGTCAC
Band lengths:
146-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]