RnoEX0101605 @ rn6
Exon Skipping
Gene
ENSRNOG00000043053 | Zfp639
Description
zinc finger protein 639 [Source:RGD Symbol;Acc:1585689]
Coordinates
chr2:118908709-118910091:+
Coord C1 exon
chr2:118908709-118908912
Coord A exon
chr2:118909641-118909730
Coord C2 exon
chr2:118910021-118910091
Length
90 bp
Sequences
Splice sites
3' ss Seq
GACAAAGTCTCTCTTTGTAGCAC
3' ss Score
5.97
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
ATGATCACCTCCCCTCTCCTATTCGTGCTTAAGAACCTGAAGCAAGATGGACTTGCTGGTGGCAGTATGGAACAGTGAGGGTTCACACATGCATACTTAGTTACCTGATGCCAGAAGTCCGAAGACATGTACTCTTGGGCCTTTGGTTCGGTCTATGTTGCAATGGACTTTATTGGCGTTGGTCTCTTCCTTGCTTAGAATGAG
Seq A exon
CACTGACCTGAAGCTTAACTATGTAGACCAGGTTGGCCTCAACCTCACAGAGATCTCCGTTCATCAGCCTCCCAGTTGCTGGGAGTAAAG
Seq C2 exon
GCACTTCTTGCCATTCGTGGAAACCTGCCTGTAGTTCATTTTTCTCACAGCAGTATTGAGAGTTATACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043053_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTGGCAGTATGGAACAG
R:
ACAGGCAGGTTTCCACGAATG
Band lengths:
182-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]