RnoEX0101607 @ rn6
Exon Skipping
Gene
ENSRNOG00000043053 | Zfp639
Description
zinc finger protein 639 [Source:RGD Symbol;Acc:1585689]
Coordinates
chr2:118908709-118912594:+
Coord C1 exon
chr2:118908709-118908912
Coord A exon
chr2:118910576-118910644
Coord C2 exon
chr2:118912484-118912594
Length
69 bp
Sequences
Splice sites
3' ss Seq
AAATGTTTTTCTGTTTTTAGATT
3' ss Score
9.49
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
ATGATCACCTCCCCTCTCCTATTCGTGCTTAAGAACCTGAAGCAAGATGGACTTGCTGGTGGCAGTATGGAACAGTGAGGGTTCACACATGCATACTTAGTTACCTGATGCCAGAAGTCCGAAGACATGTACTCTTGGGCCTTTGGTTCGGTCTATGTTGCAATGGACTTTATTGGCGTTGGTCTCTTCCTTGCTTAGAATGAG
Seq A exon
ATTGAAAAGATATGAGTGAATATCCTAAAAAGAGAAAAAGGAAGACTTTACACCCTTCTCGATATTCAG
Seq C2 exon
ATTCTTCTGGAATAAGCAGAATTGCAGATGGAGTCAGTGGAATTTTTTCTGATCATTGTTACAGTGTTTGCTCTATGAGACAGCCAGACTTAAAATATTTTGACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043053_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.316
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGACATGTACTCTTGGGCC
R:
AGTCTGGCTGTCTCATAGAGCA
Band lengths:
175-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]