GgaEX1065578 @ galGal4
Exon Skipping
Gene
ENSGALG00000005944 | ZNF639
Description
zinc finger protein 639 [Source:RefSeq peptide;Acc:NP_001264409]
Coordinates
chr9:17009426-17010679:-
Coord C1 exon
chr9:17010547-17010679
Coord A exon
chr9:17010110-17010177
Coord C2 exon
chr9:17009426-17009533
Length
68 bp
Sequences
Splice sites
3' ss Seq
TCCCTTTATGATTAACACAGACT
3' ss Score
3.82
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GATTAAGGTGTATTAAACGCTGTCCCTCCACAGATGAAGGCCTCGCGCTGCTGCATTTGCTGCATGTGGGAGCAGTGCAGCTGTCAGCCTCTGAGCTGCTCTGCTTGCTGATGCTGAAGAGTGTGGGACTTTG
Seq A exon
ACTGTTCAAAATGAATGAGCATCCTAAGAAGAGGAAACGGAAGACACTACACCCTTCTCGATATTCAG
Seq C2 exon
ATTCTTCAGGTGCACCTAAATACATAGACAATAGTGGGATTTTTTCTGACCACTGCTACAGTGTCTGTTCTATGAAACAACCAGACATAAAGTATTCTGAAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005944-'6-3,'6-2,7-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.405
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACGCTGTCCCTCCACAGA
R:
ACTGTAGCAGTGGTCAGAAAA
Band lengths:
182-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]