HsaEX6059631 @ hg38
Exon Skipping
Gene
ENSG00000121864 | ZNF639
Description
zinc finger protein 639 [Source:HGNC Symbol;Acc:HGNC:30950]
Coordinates
chr3:179327561-179329728:+
Coord C1 exon
chr3:179327561-179327631
Coord A exon
chr3:179328283-179328351
Coord C2 exon
chr3:179329618-179329728
Length
69 bp
Sequences
Splice sites
3' ss Seq
AATTTTTTCTCGTTTTTTAGATT
3' ss Score
10.5
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GCATTTTTTACTGTCTACAGAAACTTATTGTAATTCATTTTTCCTCACTCCAGTAGTAAGAATTATACCAA
Seq A exon
ATTGAAAAGATATGAATGAGTATCCTAAAAAAAGAAAAAGGAAGACTCTACACCCTTCTCGTTATTCAG
Seq C2 exon
ATTCCTCTGGAATAAGCAGAATTGCAGATGGATTCAATGGAATTTTCTCTGATCATTGTTACAGTGTCTGTTCTATGAGACAGCCAGATTTAAAATATTTTGACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121864-'6-18,'6-14,9-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.973 C2=0.140
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTAATTCATTTTTCCTCACTCCA
R:
AAATCTGGCTGTCTCATAGAACAGAC
Band lengths:
135-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains