MmuEX0053509 @ mm10
Exon Skipping
Gene
ENSMUSG00000027667 | Zfp639
Description
zinc finger protein 639 [Source:MGI Symbol;Acc:MGI:1915028]
Coordinates
chr3:32514384-32517139:+
Coord C1 exon
chr3:32514384-32514454
Coord A exon
chr3:32515284-32515352
Coord C2 exon
chr3:32517029-32517139
Length
69 bp
Sequences
Splice sites
3' ss Seq
AAATGTTCTTCATTTTTTAGATT
3' ss Score
9.51
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GCACTTTTTGTCATTTGTGGAAACTTGCCTGTAATTCATTTTCCTCACTGCAGTATTGAGAGTTATACCAA
Seq A exon
ATTGAAAAGATATGAATGAATATCCTAAAAAAAGAAAAAGGAAGACTTTACACCCTTCTCGCTATTCAG
Seq C2 exon
ATTCTTCTGGAATAAGCAGAATTGCAGATGGAGTCAGTGGGATTTTTTCTGATCACTGTTACAGTGTCTGCTCTATGAGACAGCCAGACTTAAAATATTTTGACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027667_MULTIEX1-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.340
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCATTTGTGGAAACTTGCCTG
R:
TGTCAAAATATTTTAAGTCTGGCTGT
Band lengths:
168-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types