HsaEX6059631 @ hg19
Exon Skipping
Gene
ENSG00000121864 | ZNF639
Description
zinc finger protein 639 [Source:HGNC Symbol;Acc:30950]
Coordinates
chr3:179045349-179047516:+
Coord C1 exon
chr3:179045349-179045419
Coord A exon
chr3:179046071-179046139
Coord C2 exon
chr3:179047406-179047516
Length
69 bp
Sequences
Splice sites
3' ss Seq
AATTTTTTCTCGTTTTTTAGATT
3' ss Score
10.5
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GCATTTTTTACTGTCTACAGAAACTTATTGTAATTCATTTTTCCTCACTCCAGTAGTAAGAATTATACCAA
Seq A exon
ATTGAAAAGATATGAATGAGTATCCTAAAAAAAGAAAAAGGAAGACTCTACACCCTTCTCGTTATTCAG
Seq C2 exon
ATTCCTCTGGAATAAGCAGAATTGCAGATGGATTCAATGGAATTTTCTCTGATCATTGTTACAGTGTCTGTTCTATGAGACAGCCAGATTTAAAATATTTTGACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121864-'4-8,'4-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.969 C2=0.138
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTAATTCATTTTTCCTCACTCCA
R:
AAATCTGGCTGTCTCATAGAACAGAC
Band lengths:
135-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)