RnoEX0101603 @ rn6
Exon Skipping
Gene
ENSRNOG00000043053 | Zfp639
Description
zinc finger protein 639 [Source:RGD Symbol;Acc:1585689]
Coordinates
chr2:118910587-118915102:+
Coord C1 exon
chr2:118910587-118910644
Coord A exon
chr2:118912484-118912594
Coord C2 exon
chr2:118914968-118915102
Length
111 bp
Sequences
Splice sites
3' ss Seq
TCATTTTGTTTTACATTCAGATT
3' ss Score
8.58
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATGAGTGAATATCCTAAAAAGAGAAAAAGGAAGACTTTACACCCTTCTCGATATTCAG
Seq A exon
ATTCTTCTGGAATAAGCAGAATTGCAGATGGAGTCAGTGGAATTTTTTCTGATCATTGTTACAGTGTTTGCTCTATGAGACAGCCAGACTTAAAATATTTTGACAACAAAG
Seq C2 exon
ATGATGATTCTGATCCTGAGACAGCAAATGACTTGCCCAAATTTACAGATGGAACCAAGGCCAGAAGCAGGAGTCAGAGCTGCCTGGTTCCCAGCCCTGTGCTTAGGATTCTAGAGCACACTGTCTTTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043053-'2-4,'2-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.316 C2=0.478
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGACTTTACACCCTTCTCGA
R:
TGTGGAAAAGACAGTGTGCTCT
Band lengths:
165-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]