HsaEX0074109 @ hg19
Exon Skipping
Gene
ENSG00000121864 | ZNF639
Description
zinc finger protein 639 [Source:HGNC Symbol;Acc:30950]
Coordinates
chr3:179046071-179050911:+
Coord C1 exon
chr3:179046071-179046139
Coord A exon
chr3:179047406-179047516
Coord C2 exon
chr3:179050777-179050911
Length
111 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCATTTTATGTTCAGATT
3' ss Score
7.29
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
ATTGAAAAGATATGAATGAGTATCCTAAAAAAAGAAAAAGGAAGACTCTACACCCTTCTCGTTATTCAG
Seq A exon
ATTCCTCTGGAATAAGCAGAATTGCAGATGGATTCAATGGAATTTTCTCTGATCATTGTTACAGTGTCTGTTCTATGAGACAGCCAGATTTAAAATATTTTGACAACAAAG
Seq C2 exon
ATGATGATTCTGATACCGAGACGTCAAATGACTTGCCAAAATTTGCAGATGGAATCAAGGCCAGAAACAGAAATCAGAACTACCTGGTTCCCAGTCCTGTACTTAGAATTCTAGACCACACTGCCTTTTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121864_MULTIEX2-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.969 A=0.138 C2=0.450
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAAAGGAAGACTCTACACCCT
R:
TGTAGAAAAGGCAGTGTGGTCT
Band lengths:
171-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)