MmuEX0053510 @ mm9
Exon Skipping
Gene
ENSMUSG00000027667 | Zfp639
Description
zinc finger protein 639 [Source:MGI Symbol;Acc:MGI:1915028]
Coordinates
chr3:32409181-32419607:+
Coord C1 exon
chr3:32409181-32409511
Coord A exon
chr3:32415951-32416061
Coord C2 exon
chr3:32418454-32419607
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTCATTTTGTTTGCATTCAGATT
3' ss Score
8.86
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TCTAGCCCGGATGTTGGGATTTGAGGACAACCACCATGCGTGAAACACTAATGATCCTGAAGACCCTGAGGATCGATCACTGCGGCCTTCCAGGAAACCGATGAGTGGGACAGCGCTGACCTCAGGGGGGAAGGTGGCACGGCCCGGATGTGCCCGTAGGGGACGCTAGACAGCACTGCTAGTCTCTCCTTGTCCTGCTGTTAGGCCCCGCCCTTAGCATGAAGCCACGCCCCCTCCATGCTCAGGCCACGCCCTCATCCTTAGGGTTCCCGCCCCCCGTCCCCCATCTTTACTCTCGCGGCCCGCTGTGGCGCATGCGCGGGGTGACGGG
Seq A exon
ATTCTTCTGGAATAAGCAGAATTGCAGATGGAGTCAGTGGGATTTTTTCTGATCACTGTTACAGTGTCTGCTCTATGAGACAGCCAGACTTAAAATATTTTGACAACAAAG
Seq C2 exon
AAAAATCTACTGAAGTTGAGATCTGTGATGAAGAATGTGCCTCACCTGAGTCAGTGCATCAGCATACTCAAGAGGAGAGCCCTATAGAAGTTCATACCTCAGAAGACGTCCCAATTGCTGTAGAAGTTCATGCAATCTCTGAAGACTATGATATAGAGGCAGAGAACAATTCCTCTGAGAGCCTCCAAGACCAGGCCGATGAAGAACCACCAGCTAAACTCTGTAAAATTCTTGACAAGGGCCAGGCTTTGAATGTGACTGCCCAACAGAAGTGGCCTCTCCTGAGAGCCAACAGCAGTGGTCTCTACAAGTGTGAACTTTGTGAATTTAACAGTAAATACTTTTCTGACCTAAAGCAACATGTGATCCTGAAACACAAGCGCACTGACTCGAATGTGTGTCGGGTGTGTAAGGAAAGCTTCTCTACCAACATGCTTCTCATTGAACACGCCAAACTCCATGAAGAAGACCCCTACATCTGTAAGTACTGTGATTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027667_MULTIEX1-4/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.316 C2=0.120
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF138941=zf-C2H2_4=WD(100=6.2),PF0009621=zf-C2H2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=7.0),PF139121=zf-C2H2_6=WD(100=6.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTCCCCCATCTTTACTCT
R:
TGGTCTTGGAGGCTCTCAGAG
Band lengths:
249-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: