MmuEX0053510 @ mm10
Exon Skipping
Gene
ENSMUSG00000027667 | Zfp639
Description
zinc finger protein 639 [Source:MGI Symbol;Acc:MGI:1915028]
Coordinates
chr3:32515284-32519244:+
Coord C1 exon
chr3:32515284-32515352
Coord A exon
chr3:32517029-32517139
Coord C2 exon
chr3:32519110-32519244
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTCATTTTGTTTGCATTCAGATT
3' ss Score
8.86
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATTGAAAAGATATGAATGAATATCCTAAAAAAAGAAAAAGGAAGACTTTACACCCTTCTCGCTATTCAG
Seq A exon
ATTCTTCTGGAATAAGCAGAATTGCAGATGGAGTCAGTGGGATTTTTTCTGATCACTGTTACAGTGTCTGCTCTATGAGACAGCCAGACTTAAAATATTTTGACAACAAAG
Seq C2 exon
ATGATGATTCTGATCCTGAGACAGCAAATGACTTGCCCAAATTTGCAGATGGAACCAAGGCCAGAAACAGGAATCAGAGCTACCTGGTTCCCAGCCCTGTGCTTAGGATTCTAGACCACACTGTCTTTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027667-'11-15,'11-10,12-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.340 C2=0.578
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF110933=Mitochondr_Som1=PU(72.7=69.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGACTTTACACCCTTCTCGC
R:
CTGTGGAAAAGACAGTGTGGTC
Band lengths:
165-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types