BtaEX0041459 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037393 | ZNF639
Description
Bos taurus zinc finger protein 639 (ZNF639), mRNA. [Source:RefSeq mRNA;Acc:NM_001099023]
Coordinates
chr1:88406958-88418019:-
Coord C1 exon
chr1:88414884-88418019
Coord A exon
chr1:88409128-88409238
Coord C2 exon
chr1:88406958-88407092
Length
111 bp
Sequences
Splice sites
3' ss Seq
AAATTTTGTTTTATGTTCAGATT
3' ss Score
6.23
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
ACCTGTATCACCGTGGTGATAAGAAAAGAAGCTTATAAGTTCACAGAAAAAACTTTACAATGCGTTTTTTCTCTGACATTCCTTATTTTCCCACTGCTATAGTAGAAAGAACACTAATCTGAAATGGAGGAAAGAGTTCTGATTCTAACACTACTACTTCAGTTGGACTGATTAATTTATCTCCCTATTTCTATAAATAAAAGAGATTAAAAGCATAGACTTGAAAATCTTATGTTCAAGTTAGATCTCTGTTCAACCCTGTCACTTATTTACTATTCCCCTGACTTAAGTTTATGCCTCAATTTCCTTATCAATTGTTGTATAGCCATTATGTTGTGTCAAACTCTGCGATGGTTCCTTTGTCCATGGGATTTTCCAGGTAAGAATACTGAAGTGTGTTGCCATTTCTTTTTCCAGGGGATCTTCCTGACCCAGGGTCCCAACCTGTATCTCCTGCATCTTCTACAGTGCAAGCAGATTCTTTACCACTGAGCCACCTG
Seq A exon
ATTCCTCTGGAATAAGCAGAATTGCAGATGGATTCAATGGAATTTTTTCTGATCATTGTTACAGTGTTTGTTCTATGAGACAACCAGACTTAAAATATTTTGACAACAAAG
Seq C2 exon
ATGATGATTCTGATACAGAGACATCAAATGAATTGCCAAAATTTACAGATGGAATCAAAGCCAGAAACAGAAATCAAAACTACTTGGTTCCCAGTCCTGTACTTAGAATTCTAGACCACACTGCCTTTCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037393_MULTIEX1-3/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.211 C2=0.543
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAAGTGTGTTGCCATTTCT
R:
TGTAGGAAAGGCAGTGTGGTC
Band lengths:
247-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development