GgaEX0008398 @ galGal3
Exon Skipping
Gene
ENSGALG00000005944 | Q5ZKW6_CHICK
Description
NA
Coordinates
chr9:18763258-18764358:-
Coord C1 exon
chr9:18764291-18764358
Coord A exon
chr9:18763607-18763714
Coord C2 exon
chr9:18763258-18763392
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTTTCTAACATAGATT
3' ss Score
8.57
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ACTGTTCAAAATGAATGAGCATCCTAAGAAGAGGAAACGGAAGACACTACACCCTTCTCGATATTCAG
Seq A exon
ATTCTTCAGGTGCACCTAAATACATAGACAATAGTGGGATTTTTTCTGACCACTGCTACAGTGTCTGTTCTATGAAACAACCAGACATAAAGTATTCTGAAAACAGAG
Seq C2 exon
GTAGATACCACAGTCCAGTGCAGAGCATAGACACAGATGACGATGGGAGTCCAGTGCATGCTGGGACTTCCCAGTGGAGTGGGTCACATTCAAACATAGGGTTGCACTATACAGACCCTAAAAAGAAGGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005944-'7-5,'7-3,9-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.405 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTTCAAAATGAATGAGCATCCT
R:
CCTTCTTTTTAGGGTCTGTATAGTGC
Band lengths:
197-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]