RnoEX0101677 @ rn6
Exon Skipping
Gene
ENSRNOG00000022391 | Zfp711
Description
zinc finger protein 711 [Source:RGD Symbol;Acc:1562768]
Coordinates
chrX:84062596-84065539:+
Coord C1 exon
chrX:84062596-84062696
Coord A exon
chrX:84064455-84064573
Coord C2 exon
chrX:84065439-84065539
Length
119 bp
Sequences
Splice sites
3' ss Seq
AATTTCCATTTCCATAATAGGTA
3' ss Score
7.12
5' ss Seq
AAGGTGATT
5' ss Score
5.88
Exon sequences
Seq C1 exon
GTCCACGGCTGCCGCCCCCCGCGGCAGTTGAGAGCGCGGCCTCCGACTGACTGGAGGCGGGGAAGGCGGTGTTGGCTGCAGCCCCGGGGCGGCGGTGACAG
Seq A exon
GTAAAGACCGTTTTCCCAAGGAAAATGCATAGTTTTGAAGGAAAAAAAAAAGAAATTTTGCAAAGTTTACTTTAGAATCCATAAGAAAACCTACAGTTTCTTCAGCTCACTTGTAAAAG
Seq C2 exon
GAAGCAGTCATGTTTCATGCGTCCTCAAAACTCTGAGACAAGAGAATGTAGTAGAGTGAGGCCAGAAGTCCTTACTGGTTCAAAGAACTCCGGGGAAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022391-'0-1,'0-0,1-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTGAGAGCGCGGCCT
R:
AAGTTTCCCCGGAGTTCTTTGA
Band lengths:
178-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]