HsaEX0074248 @ hg38
Exon Skipping
Gene
ENSG00000147180 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:HGNC:13128]
Coordinates
chrX:85244032-85247651:+
Coord C1 exon
chrX:85244032-85244191
Coord A exon
chrX:85245903-85246022
Coord C2 exon
chrX:85247532-85247651
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGAATGTATTTTTATAATAGGTA
3' ss Score
6.49
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
CGGAAACCCGAATGTGAGGACCTTAAGGGATCCACAGCTGCCGCCCCCCGCAGCCATCCAGAGCGCGGTCACAGTCCGACTGGCGGCACGGAGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCAGCGGCGGCGGCAGCTGTAGCTGCAGCAGCAG
Seq A exon
GTAAAGAGAGCGTTTTCCCAAAGAAAATAACATAGCACAGAAGGAAAAATAAAAAGAAATTGCTGCAGATTTTACTTTATGTGAGAAAATCTACAATTTCTTCGAGACACTCATATAAAG
Seq C2 exon
CCATTTCTTTTGCAGATATTGGTGAATGAACTTTGCTAAGTATGGATTCAGGCGGTGGAAGTCTTGGATTGCACACGCCAGACTCTAGAATGGCCCATACCATGATTATGCAAGATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147180_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.476
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACCCGAATGTGAGGACC
R:
GCCATTCTAGAGTCTGGCGTG
Band lengths:
253-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development