HsaALTD1026184-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000147180 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:HGNC:13128]
Coordinates
chrX:85247095-85247651:+
Coord C1 exon
chrX:85247095-85247183
Coord A exon
chrX:85247184-85247188
Coord C2 exon
chrX:85247547-85247651
Length
5 bp
Sequences
Splice sites
5' ss Seq
AATGTATAA
5' ss Score
-3.61
3' ss Seq
AAAAGCCATTTCTTTTGCAGATA
3' ss Score
8.65
Exon sequences
Seq C1 exon
AGCTCCGCTGCAGGGCTGATCTGGGTCTGGAAGAAATGGATGAGAGCCAGTGGATGAAATTCACTAATACTAGACATCTGAGTCCTCTA
Seq A exon
GTAAT
Seq C2 exon
ATATTGGTGAATGAACTTTGCTAAGTATGGATTCAGGCGGTGGAAGTCTTGGATTGCACACGCCAGACTCTAGAATGGCCCATACCATGATTATGCAAGATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147180-4-5,5-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.484
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGAGAGCCAGTGGATGA
R:
TCCACCGCCTGAATCCATACT
Band lengths:
97-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains