MmuALTD1011683-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000025529 | Zfp711
Description
zinc finger protein 711 [Source:MGI Symbol;Acc:MGI:3045342]
Coordinates
chrX:112603660-112604372:+
Coord C1 exon
chrX:112603660-112603805
Coord A exon
chrX:112603806-112603918
Coord C2 exon
chrX:112604268-112604372
Length
113 bp
Sequences
Splice sites
5' ss Seq
AATGTATAC
5' ss Score
-2.14
3' ss Seq
TCAAACCATTTGTTTTACAGATA
3' ss Score
8.93
Exon sequences
Seq C1 exon
GAAGCAGTCATGTTTCATGAGTCCTCAAAACTGTGAGACAAGAGAATGTAGTAGAGTGAGGCCAGAAGTCCCTACTGGTTCAAAGAACTCCGGGGAAACTTGTGATAGAACATTTTGCATTATAAGTAGAGCCCCAGGAACCAGAG
Seq A exon
GTGAATACAATATCTGCAGAGCTCCGCTGCAGGGCTGATCTGGTTCTGGAAGAAATGGATCAGAGCTACTGGATGAAATTCACTAATGCTAGACACCTGAGTCCTCTAGTAAT
Seq C2 exon
ATACATGTGAATGAGCTTTGCTAAGGATGGAGTCAGGTGGTGGAAGTCTTGGATTGCACACTTCAGATGCTAGAATGGCTCATACCATGATTATGCAGGATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025529-2-2,3-2,4-2-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.370
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGTTTCATGAGTCCTCAAAACTG
R:
AAATCCTGCATAATCATGGTATGAGC
Band lengths:
242-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types