RnoALTD0034631-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000022391 | Zfp711
Description
zinc finger protein 711 [Source:RGD Symbol;Acc:1562768]
Coordinates
chrX:84065604-84066151:+
Coord C1 exon
chrX:84065604-84065692
Coord A exon
chrX:84065693-84065697
Coord C2 exon
chrX:84066047-84066151
Length
5 bp
Sequences
Splice sites
5' ss Seq
AATGTATAA
5' ss Score
-3.61
3' ss Seq
TCAACCCATTTATTTTACAGGTC
3' ss Score
10.24
Exon sequences
Seq C1 exon
AGCTCCGCTGCAGGGCTGATCTGGTTCTGGAAGAAATGGATGAGAGCTACTGGATGAAATTCACTAATACTAAACACCTGAGTCCTCTA
Seq A exon
GTAAT
Seq C2 exon
GTCCCTGTGAATGAGCTTTGCTAAGGATGGATTCAGGTGGTGGAAGTCTTGGATTGCACACTTCAGATGCTAGAATGGCTCATACTATGATTATGCAGGATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022391-3-3,4-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.269
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCTGATCTGGTTCTGGAA
R:
AGCAAAGCTCATTCACAGGGA
Band lengths:
100-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]