HsaEX1046509 @ hg38
Exon Skipping
Gene
ENSG00000147180 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:HGNC:13128]
Coordinates
chrX:85245903-85247651:+
Coord C1 exon
chrX:85245903-85246022
Coord A exon
chrX:85247095-85247183
Coord C2 exon
chrX:85247532-85247651
Length
89 bp
Sequences
Splice sites
3' ss Seq
GAATACAAGTTTATCTGCAGAGC
3' ss Score
1.5
5' ss Seq
CTAGTAATG
5' ss Score
-2.75
Exon sequences
Seq C1 exon
GTAAAGAGAGCGTTTTCCCAAAGAAAATAACATAGCACAGAAGGAAAAATAAAAAGAAATTGCTGCAGATTTTACTTTATGTGAGAAAATCTACAATTTCTTCGAGACACTCATATAAAG
Seq A exon
AGCTCCGCTGCAGGGCTGATCTGGGTCTGGAAGAAATGGATGAGAGCCAGTGGATGAAATTCACTAATACTAGACATCTGAGTCCTCTA
Seq C2 exon
CCATTTCTTTTGCAGATATTGGTGAATGAACTTTGCTAAGTATGGATTCAGGCGGTGGAAGTCTTGGATTGCACACGCCAGACTCTAGAATGGCCCATACCATGATTATGCAAGATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147180_MULTIEX1-3/3=1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.476
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGCGTTTTCCCAAAGAA
R:
TCCACCGCCTGAATCCATACT
Band lengths:
175-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains