BtaEX0041506 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002668 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:HGNC:13128]
Coordinates
chrX:74999166-75000830:-
Coord C1 exon
chrX:75000730-75000830
Coord A exon
chrX:74999640-74999896
Coord C2 exon
chrX:74999166-74999266
Length
257 bp
Sequences
Splice sites
3' ss Seq
CTTATCTCTACTACATTTAGGAA
3' ss Score
7.15
5' ss Seq
CTAGTAATG
5' ss Score
-2.75
Exon sequences
Seq C1 exon
TAACGTAGTTCAGAAGGAAAAATAACAAAAACAAAATGCTGCAGATTTTATTTTACAATATGTAAGAAAATCTACAGTTTCTTCAGGATACTCATATTAAG
Seq A exon
GAAGCAGTCATGTTTCATGAGTCCTCAAAACTGTGAGCCAAGAGATTGTAGTAGAGTAAGGCAAGAAGTCCTTACTGGCTCAAAGAACTCCAGGGAAACTGGGATAGAACATTTTTCATTATAAGTAGAACCCCGGGAGCCAGAGGTGAAACACAAGTTTATCTGCAGAGCTACGCTGCAGGGCTGAGCTGGGTCTGGAAGAAATGGATGAGAGCCACTGGATGAAATGCACTAATACTAGACACCTGAGTCCTCTA
Seq C2 exon
AGATTTGTGAATGAACTTTACTAAGTATGGATCCAGGTGGTGGAAGTCTTGGATTGCACACATCAGACTCTAGAATGGCCCATACCATGATTATGCAGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002668-'0-2,'0-1,1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTAGTTCAGAAGGAAAAATAACAA
R:
TGCATAATCATGGTATGGGCCA
Band lengths:
196-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development