BtaEX0041507 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002668 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:HGNC:13128]
Coordinates
chrX:74992542-74999740:-
Coord C1 exon
chrX:74999640-74999740
Coord A exon
chrX:74999162-74999266
Coord C2 exon
chrX:74992542-74993084
Length
105 bp
Sequences
Splice sites
3' ss Seq
AAAAAACACTTCTTTTACAGAGA
3' ss Score
5.63
5' ss Seq
TTGGTAAAG
5' ss Score
4.05
Exon sequences
Seq C1 exon
GTTTATCTGCAGAGCTACGCTGCAGGGCTGAGCTGGGTCTGGAAGAAATGGATGAGAGCCACTGGATGAAATGCACTAATACTAGACACCTGAGTCCTCTA
Seq A exon
AGATTTGTGAATGAACTTTACTAAGTATGGATCCAGGTGGTGGAAGTCTTGGATTGCACACATCAGACTCTAGAATGGCCCATACCATGATTATGCAGGATTTTG
Seq C2 exon
TTGCTGGAATGACTGGTACTGCGCATATCGATGGAGACCATATTGTTGTTTCAGTTCCTGAAGCTGTATTAGTTTCTGATGTTGTCACAGATGGTGGGATAACTCTTGATCATGGCCTTGCAGCTGAAGTTGTCCATGGGCCTGATATCATCACTGAGACTGATGTAGTAACAGAAGGTGTAATTGTTCCTGAAGCTGTACTTGAGGCTGATGTTGCTATTGAAGAGGACTTAGAGGAAGATGATGGTGATCACATCTTGACGTCTGAGCTAATTACAGAAACTGTTAGAGTACCTGAGCAGGTTTTTGTGGCTGATCTTGTTACTGGTCCTGATGGACACTTGGAACATGTGGTCCAAGATTGTGTTTCAGGAGTTGACTCTCCCACAGTGGTTTCAGAGGAGGTTCTTGTAACTAATTCAGATACAGAAACTGTGATTCAAGCAGCTGGTGGTGTTCCTGGTTCTACAGTTACTATTAAAACTGAAGATGATGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002668-'1-3,'1-2,2-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.444 C2=0.352
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF047048=Zfx_Zfy_act=PU(47.2=79.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCACTGGATGAAATGCACT
R:
CAGCCTCAAGTACAGCTTCAGG
Band lengths:
255-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development