MmuEX6045748 @ mm10
Exon Skipping
Gene
ENSMUSG00000025529 | Zfp711
Description
zinc finger protein 711 [Source:MGI Symbol;Acc:MGI:3045342]
Coordinates
chrX:112600526-112615435:+
Coord C1 exon
chrX:112600526-112600905
Coord A exon
chrX:112604268-112604372
Coord C2 exon
chrX:112614893-112615435
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCAAACCATTTGTTTTACAGATA
3' ss Score
8.93
5' ss Seq
TTGGTAAAG
5' ss Score
4.05
Exon sequences
Seq C1 exon
GCACTCGGACTCCACCGGCGGCGCAGCCTTGGCTGCGAGTCCGCGGGGTCTCCTAGCACGAACCCAGCGCGGGCTCCACGGTCGGCGTGGCGCGCGCGTGCGCGCGCTCCCCCTTTGGCCCCCTACCCTGCAGCAAGGGTAGCGTGACGTAATGCAACCTCAGCATGTAGGAGCGCTATAAAGCGGGACGAGGCGGCGCGCCTCGCAGACGCAGAGTAGCTCGTGATTGGCTCGGGCTGCGGAACCTCGGAATCCCGAACGAACGCCAGGACCTTCCAGGTCCACGGCTGCCGCCCCCCGCGGCAGTTGAGAGCGCGGCCTCCGACTGCCTGGCGGCGGGGAAGGCGGTGGCGGTTGCAGCCCCGCGGAGGCGGTGACAG
Seq A exon
ATACATGTGAATGAGCTTTGCTAAGGATGGAGTCAGGTGGTGGAAGTCTTGGATTGCACACTTCAGATGCTAGAATGGCTCATACCATGATTATGCAGGATTTTG
Seq C2 exon
TGGCTGGAATGGCTGGTACTGCACATATCGATGGAGACCATATTGTAGTTTCAGTTCCTGAAGCTGTATTAGTTTCTGATGTTGTCACAGATGATGGGATAACTCTCGATCATGGCCTTGCAGCTGAAGTTGTCCATGGGCCTGATATTATTACAGAGACTGATGTGGTAACAGAAGGGGTGATTGTTCCTGAAGCTGTGCTTGAAGCCGATGTTGCCATTGAAGAAGATTTGGAAGAAGATGATGGAGATCATATCTTAACTTCTGAGCTTATTACAGAAACCGTTAGGGTACCTGAGCAGGTTTTTGTGGCTGATCTTGTTTCTGGTCCTGATGGACATTTGGAACATGTGGTCCAAGATTGTGTTTCAGGTGTGGACTCTCCCACAATGGTGTCAGAAGAAGTTCTTGTAACTAATTCAGATACAGAAACTGTGATTCAAGCAGGTGGTGGTGTTCCTGGTTCTACTGTTACCATAAAAACGGAAGAAGATGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025529-'0-7,'0-2,5-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.370 C2=0.399
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF047048=Zfx_Zfy_act=PU(47.4=79.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTCAGCATGTAGGAGCG
R:
GTGCAGTACCAGCCATTCCAG
Band lengths:
250-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types