GgaEX0009856 @ galGal4
Exon Skipping
Gene
ENSGALG00000006929 | ZNF6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHJ7]
Coordinates
chr4:8672626-8676187:-
Coord C1 exon
chr4:8675895-8676187
Coord A exon
chr4:8674169-8674273
Coord C2 exon
chr4:8672626-8673156
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTCTGATTTTGCTTTTGCAGTTA
3' ss Score
8.71
5' ss Seq
TCGGTAAAC
5' ss Score
4.93
Exon sequences
Seq C1 exon
ATACATTCGTCTTTTTCCCTCTCTAAGAATTTGCATTGTAGATTTCAAGACAATTTGAGACAAGTAGATTTCAACTGTGCTGCGGGGAAAAAGTGTTAAAAGGGTGATGCTGACTCTGGGTGATAACAGTTCTTTGGTTCTTTTGTGTCCTCAGTTAAGTTGGAGCCTCCCTGGGGTGGAACGGTGACTGTTGCTTGAAATCTCCATGTTTGCGGGCTGCTTCCTCACCTGAGGATTTCAAGAGTGTGAAAGAATAACCTCTGCTCAGTTCCTTCCTTGATAATGAAGATACA
Seq A exon
TTATTTGTGAATGAATTTAACTGAATATGGATCCGGGTGGTGGAAGTCTTGGATTGCAAACACAAGAATCCAAAATGCCTCACGCCATGATTATGCAGGACTTCG
Seq C2 exon
TGGCTGGAATGGCCGGCACTGCTCATATTGATGGAGATCATATTGTTGTGTCGGTCCCTGAAGCTGTCCTTGTTTCTGATGTTGTTACTGATGATGGAATAACTCTTGACCATGGCTTAGCAGCTGAAGTTGTGCAAGGACCTGACATCATCACTGAAACTGATGTTGTAACAGAGGGTGTCATTGTTCCTGATTCTGTTCTGGAAACTGATGTGGCTATTGAAGAAGCACTAGATACCAGTGATCATGTTCTGACTTCTGATCTAATAACAGAAGCTGTTAGAGTTCCTGATCAGGTGTTTGTGGCTGACCTTGTTACGGGTCCTGATGGACATTTAGAGCACGTGGTGCAAGACTCCGTGTCAGCAGCTGACTCACCTACAATGGTCTCGGAAGAAGTCCTTGTAACGAACTCAGATTCTGAAGCAGTCGTTCAGGCAGCTGGTACTGTTCCTGGCTCTACAGTGACTATAAAAACAGAAGATGATGATGACGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006929_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.563 C2=0.299
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF047048=Zfx_Zfy_act=PU(41.8=78.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACGGTGACTGTTGCTTGA
R:
GGTCCTTGCACAACTTCAGCT
Band lengths:
258-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]