HsaEX0074245 @ hg19
Exon Skipping
Gene
ENSG00000147180 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:13128]
Coordinates
chrX:84500909-84510807:+
Coord C1 exon
chrX:84500909-84501028
Coord A exon
chrX:84502553-84502657
Coord C2 exon
chrX:84510265-84510807
Length
105 bp
Sequences
Splice sites
3' ss Seq
AAAAGCCATTTCTTTTGCAGATA
3' ss Score
8.65
5' ss Seq
TTGGTAAAG
5' ss Score
4.05
Exon sequences
Seq C1 exon
GTAAAGAGAGCGTTTTCCCAAAGAAAATAACATAGCACAGAAGGAAAAATAAAAAGAAATTGCTGCAGATTTTACTTTATGTGAGAAAATCTACAATTTCTTCGAGACACTCATATAAAG
Seq A exon
ATATTGGTGAATGAACTTTGCTAAGTATGGATTCAGGCGGTGGAAGTCTTGGATTGCACACGCCAGACTCTAGAATGGCCCATACCATGATTATGCAAGATTTTG
Seq C2 exon
TGGCTGGAATGGCTGGTACTGCACATATCGATGGAGACCATATTGTTGTTTCAGTTCCTGAAGCTGTTTTAGTTTCTGATGTTGTCACAGATGATGGGATAACTCTTGATCATGGCCTTGCAGCTGAAGTTGTCCATGGACCTGATATCATCACAGAGACTGATGTAGTAACAGAAGGTGTGATTGTTCCTGAAGCGGTACTTGAAGCTGATGTTGCCATTGAAGAGGATTTAGAGGAAGATGATGGTGATCACATCTTGACTTCTGAACTAATTACAGAAACCGTTAGGGTACCAGAGCAGGTTTTCGTGGCTGACCTTGTTACTGGTCCTAATGGACACTTAGAACATGTGGTCCAAGATTGTGTTTCAGGAGTCGACTCTCCCACAATGGTATCAGAGGAGGTTCTTGTAACTAATTCAGATACAGAAACTGTGATTCAAGCAGCTGGAGGTGTTCCTGGTTCTACAGTTACTATAAAAACCGAAGATGATGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147180-'2-4,'2-3,4-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.412 C2=0.378
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF047048=Zfx_Zfy_act=PU(47.2=79.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGCGTTTTCCCAAAGAA
R:
TGGACAACTTCAGCTGCAAGG
Band lengths:
252-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)