MmuEX6045748 @ mm9
Exon Skipping
Gene
ENSMUSG00000025529 | Zfp711
Description
zinc finger protein 711 [Source:MGI Symbol;Acc:MGI:3045342]
Coordinates
chrX:109714135-109729044:+
Coord C1 exon
chrX:109714135-109714514
Coord A exon
chrX:109717877-109717981
Coord C2 exon
chrX:109728502-109729044
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCAAACCATTTGTTTTACAGATA
3' ss Score
8.93
5' ss Seq
TTGGTAAAG
5' ss Score
4.05
Exon sequences
Seq C1 exon
GCACTCGGACTCCACCGGCGGCGCAGCCTTGGCTGCGAGTCCGCGGGGTCTCCTAGCACGAACCCAGCGCGGGCTCCACGGTCGGCGTGGCGCGCGCGTGCGCGCGCTCCCCCTTTGGCCCCCTACCCTGCAGCAAGGGTAGCGTGACGTAATGCAACCTCAGCATGTAGGAGCGCTATAAAGCGGGACGAGGCGGCGCGCCTCGCAGACGCAGAGTAGCTCGTGATTGGCTCGGGCTGCGGAACCTCGGAATCCCGAACGAACGCCAGGACCTTCCAGGTCCACGGCTGCCGCCCCCCGCGGCAGTTGAGAGCGCGGCCTCCGACTGCCTGGCGGCGGGGAAGGCGGTGGCGGTTGCAGCCCCGCGGAGGCGGTGACAG
Seq A exon
ATACATGTGAATGAGCTTTGCTAAGGATGGAGTCAGGTGGTGGAAGTCTTGGATTGCACACTTCAGATGCTAGAATGGCTCATACCATGATTATGCAGGATTTTG
Seq C2 exon
TGGCTGGAATGGCTGGTACTGCACATATCGATGGAGACCATATTGTAGTTTCAGTTCCTGAAGCTGTATTAGTTTCTGATGTTGTCACAGATGATGGGATAACTCTCGATCATGGCCTTGCAGCTGAAGTTGTCCATGGGCCTGATATTATTACAGAGACTGATGTGGTAACAGAAGGGGTGATTGTTCCTGAAGCTGTGCTTGAAGCCGATGTTGCCATTGAAGAAGATTTGGAAGAAGATGATGGAGATCATATCTTAACTTCTGAGCTTATTACAGAAACCGTTAGGGTACCTGAGCAGGTTTTTGTGGCTGATCTTGTTTCTGGTCCTGATGGACATTTGGAACATGTGGTCCAAGATTGTGTTTCAGGTGTGGACTCTCCCACAATGGTGTCAGAAGAAGTTCTTGTAACTAATTCAGATACAGAAACTGTGATTCAAGCAGGTGGTGGTGTTCCTGGTTCTACTGTTACCATAAAAACGGAAGAAGATGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025529-'0-4,'0-2,3-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.370 C2=0.405
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF047048=Zfx_Zfy_act=PU(47.4=79.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTCAGCATGTAGGAGCG
R:
GTGCAGTACCAGCCATTCCAG
Band lengths:
250-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: