DreEX6057312 @ danRer10
Exon Skipping
Gene
ENSDARG00000071868 | znf711
Description
zinc finger protein 711 [Source:ZFIN;Acc:ZDB-GENE-081107-49]
Coordinates
chr14:11697100-11706412:-
Coord C1 exon
chr14:11706329-11706412
Coord A exon
chr14:11703890-11703987
Coord C2 exon
chr14:11697100-11697567
Length
98 bp
Sequences
Splice sites
3' ss Seq
ATATATTTTTTCTTTTACAGTGC
3' ss Score
9.99
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
ACATTCTCCTTCCTGATGAGAGCTTCAGGTTTTCTTAAAATTTGTGACACTTTCACGTGAAAGGAACTACTGTCAAATGTGAAG
Seq A exon
TGCTGTAGAACTGTCACAGATTATGGATCAAGGTGGAGGGATCCTGGAGCTTCACAAGGACTTGAAGATGCCCCATACAATGATAATGCCAGATTTTG
Seq C2 exon
GCATGAGTGGCATAGCCCACCTTGATGGTGAGCACATTGTGGTGTCGGTGCCAGAGGCTGTGATGGTGTCAGATGTGGTGACAGATGAAGAAGGCATCATGTTGGAGACTGCCCTAGAAGCTGAAGTTGTAGAAGAGCCTGACATCTGTCAAGAGGACGTCATCACCACAGAGGGAGTGATCATGTCGGAGTCGATCCTTGGAGCTGAAGTGGCCATCCAAGAGGCTCTGAGTGGCACTGCGGATCTGATTGAAGAAACCGTGCCTGATCAGGTGTTTGTGGCTGAGCTCATGTCACCTCACATTCAAAGCCCACTGGACCACAACCTGGTGTCTGCAGAAGTCATGGTGACAGACGCGGACACGGTCATTGACTCGCACGACACCCTGCAGTCTGATGTCACCATTAAAGCAGATGATGATGAGGAGGATGTGAAAAGCACTTCAGAAGACTACCTTATGATTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071868-'2-5,'2-3,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.236
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF047048=Zfx_Zfy_act=PU(39.1=76.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTTCCTGATGAGAGCTTCA
R:
GCCTTCTTCATCTGTCACCACA
Band lengths:
175-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]