GgaEX0009856 @ galGal3
Exon Skipping
Gene
ENSGALG00000006929 | ZNF711
Description
NA
Coordinates
chr4:8757501-8760870:-
Coord C1 exon
chr4:8760770-8760870
Coord A exon
chr4:8759044-8759148
Coord C2 exon
chr4:8757501-8758031
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTCTGATTTTGCTTTTGCAGTTA
3' ss Score
8.71
5' ss Seq
TCGGTAAAC
5' ss Score
4.93
Exon sequences
Seq C1 exon
GCTTGAAATCTCCATGTTTGCGGGCTGCTTCCTCACCTGAGGATTTCAAGAGTGTGAAAGAATAACCTCTGCTCAGTTCCTTCCTTGATAATGAAGATACA
Seq A exon
TTATTTGTGAATGAATTTAACTGAATATGGATCCGGGTGGTGGAAGTCTTGGATTGCAAACACAAGAATCCAAAATGCCTCACGCCATGATTATGCAGGACTTCG
Seq C2 exon
TGGCTGGAATGGCCGGCACTGCTCATATTGATGGAGATCATATTGTTGTGTCGGTCCCTGAAGCTGTCCTTGTTTCTGATGTTGTTACTGATGATGGAATAACTCTTGACCATGGCTTAGCAGCTGAAGTTGTGCAAGGACCTGACATCATCACTGAAACTGATGTTGTAACAGAGGGTGTCATTGTTCCTGATTCTGTTCTGGAAACTGATGTGGCTATTGAAGAAGCACTAGATACCAGTGATCATGTTCTGACTTCTGATCTAATAACAGAAGCTGTTAGAGTTCCTGATCAGGTGTTTGTGGCTGACCTTGTTACGGGTCCTGATGGACATTTAGAGCACGTGGTGCAAGACTCCGTGTCAGCAGCTGACTCACCTACAATGGTCTCGGAAGAAGTCCTTGTAACGAACTCAGATTCTGAAGCAGTCGTTCAGGCAGCTGGTACTGTTCCTGGCTCTACAGTGACTATAAAAACAGAAGATGATGATGACGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006929-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.556 C2=0.286
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF047048=Zfx_Zfy_act=PU(56.7=78.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCTCCATGTTTGCGGGCT
R:
TGTCAGGTCCTTGCACAACTT
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]