RnoEX6026294 @ rn6
Exon Skipping
Gene
ENSRNOG00000022391 | Zfp711
Description
zinc finger protein 711 [Source:RGD Symbol;Acc:1562768]
Coordinates
chrX:84064427-84079195:+
Coord C1 exon
chrX:84064427-84064573
Coord A exon
chrX:84066047-84066151
Coord C2 exon
chrX:84078653-84079195
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCAACCCATTTATTTTACAGGTC
3' ss Score
10.24
5' ss Seq
TTGGTAAAG
5' ss Score
4.05
Exon sequences
Seq C1 exon
AAGTATCTAATTTCCATTTCCATAATAGGTAAAGACCGTTTTCCCAAGGAAAATGCATAGTTTTGAAGGAAAAAAAAAAGAAATTTTGCAAAGTTTACTTTAGAATCCATAAGAAAACCTACAGTTTCTTCAGCTCACTTGTAAAAG
Seq A exon
GTCCCTGTGAATGAGCTTTGCTAAGGATGGATTCAGGTGGTGGAAGTCTTGGATTGCACACTTCAGATGCTAGAATGGCTCATACTATGATTATGCAGGATTTTG
Seq C2 exon
TGGCTGGAATGGCTGGTACTGCACATATCGATGGAGACCATATTGTAGTTTCAGTTCCTGAAGCTGTATTAGTTTCTGATGTTGTCACAGATGATGGGATAACTCTCGATCATGGCCTGGCAGCTGAAGTTGTCCATGGGCCTGATATTATTACAGAGACTGATGTAGTAACAGAAGGGGTGATTGTTCCTGAAGCTGTACTTGAAGCTGATGTTGCCATTGAAGAAGATTTGGAGGAAGATGATGGAGATCATATCTTGACTTCTGAGCTTATTACAGAAACCGTTAGGGTACCTGAACAGGTTTTTGTGGCTGATATTGTTTCTGGTCCTGATGGACATTTGGAACATGTGGTCCAAGATTGTGTTTCAGGTGTTGACTCTCCCACAATGGTATCAGAAGAAGTTCTTGTAACTAATTCAGATACAGAAACTGTGATTCAAGCAACTGGTGGTGTTCCTGGTTCTACTGTTACCATAAAAACTGAAGATGATGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022391-'1-5,'1-3,5-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.269 C2=0.388
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF047048=Zfx_Zfy_act=PU(41.3=79.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAAAGACCGTTTTCCCAAGGA
R:
ATGGACAACTTCAGCTGCCAG
Band lengths:
257-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]