HsaEX0074249 @ hg19
Exon Skipping
Gene
ENSG00000147180 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:13128]
Coordinates
chrX:84500909-84502657:+
Coord C1 exon
chrX:84500909-84501028
Coord A exon
chrX:84501936-84502189
Coord C2 exon
chrX:84502553-84502657
Length
254 bp
Sequences
Splice sites
3' ss Seq
CTTATTTTTACCATATTTAGGAA
3' ss Score
7.37
5' ss Seq
CTAGTAATG
5' ss Score
-2.75
Exon sequences
Seq C1 exon
GTAAAGAGAGCGTTTTCCCAAAGAAAATAACATAGCACAGAAGGAAAAATAAAAAGAAATTGCTGCAGATTTTACTTTATGTGAGAAAATCTACAATTTCTTCGAGACACTCATATAAAG
Seq A exon
GAAGCAGTCATGTTTCATGAGTCCTCAAAACTGAGACAAGAGAATGTAGTAGAGTGAGGCCAGAAGTCCTTACTGGTTCAAAGAACTCCGGGGAAACTGGGATAGAACATTTTACATTATAAGTAGAACCCTGGGAGCCAGAGGTGAATACAAGTTTATCTGCAGAGCTCCGCTGCAGGGCTGATCTGGGTCTGGAAGAAATGGATGAGAGCCAGTGGATGAAATTCACTAATACTAGACATCTGAGTCCTCTA
Seq C2 exon
ATATTGGTGAATGAACTTTGCTAAGTATGGATTCAGGCGGTGGAAGTCTTGGATTGCACACGCCAGACTCTAGAATGGCCCATACCATGATTATGCAAGATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147180_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.444 C2=0.412
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAAGAGAGCGTTTTCCCAAAGA
R:
TCTTGCATAATCATGGTATGGGCC
Band lengths:
220-474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)