HsaINT0188214 @ hg19
Intron Retention
Gene
ENSG00000147180 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:13128]
Coordinates
chrX:84500909-84502657:+
Coord C1 exon
chrX:84500909-84501028
Coord A exon
chrX:84501029-84502552
Coord C2 exon
chrX:84502553-84502657
Length
1524 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACT
5' ss Score
6.64
3' ss Seq
AAAAGCCATTTCTTTTGCAGATA
3' ss Score
8.65
Exon sequences
Seq C1 exon
GTAAAGAGAGCGTTTTCCCAAAGAAAATAACATAGCACAGAAGGAAAAATAAAAAGAAATTGCTGCAGATTTTACTTTATGTGAGAAAATCTACAATTTCTTCGAGACACTCATATAAAG
Seq A exon
GTGACTAACAAATTACTTATTGTTTTATCTTATTTAACAGTTAAATAAAATTAAGTTTTTAAAAACATTTTCAGACATTTGTAGTTGTTCTATTAGTTATGTGGTAAAGAAAGTAATTACTCTAATTAAAATCCAAATAGTACACTGTTTTAAATGTTAAGAACATGTCCCTTTCAGATTTATTTTGTTAACACACAGGTAGTTTATTGTGAACTCTCTTGGCCTTGGACCTCATTTTGCATAATAGCAAAGCAGAAAACAATGGCATTTGAAAAAAGATACACAACTAAGAATTTCTAAAATTGTGAAGTTTGCTCATACATAAAGTAATTCTGTCTGAATCGTTTGTTATACAGAAATGTCACCTACTTCTGTAGCATATTTATGTATATACCTGAAATGGTGATAGGGGTTCCTCTGAGACTCTCCTGCCTCCTGAATACCAATTTAGCCATCCTCCTTTATTTAAGAATATATTAAGTTGTATTACGTGTCACCTTTCTGAAACTTTCATTAAGGTTGCAGCTTTATCTGTTGTGCAATATGGTACAATTTATTAAGCAGTCCTACGTGAAAAGGAGATAAGTGCCTTATAAAATTGACAGGTTTTTGTTGATTTACTTAGAATCTTATGTTTGAAGAGAAAATGCACATATATGTGTCTAAGAAATACATTGAGTGACAGCATCTGACTTTATGTTCCATACTATCAAATGGTCGTAAATATAGGATAAGTCATTTGAAATGAAATAGATTGAGCCCTTGCTTTCAAAACCACCTTGAAGCTAGCATAATTTTATTAATCACTAATAAAAAGTCAGTTGTACAATTACAAGTAAATGAAATGCTGAGATAAATAATTTGCTAAATGTTTGTATGTGATCGATCTTATTTTTACCATATTTAGGAAGCAGTCATGTTTCATGAGTCCTCAAAACTGAGACAAGAGAATGTAGTAGAGTGAGGCCAGAAGTCCTTACTGGTTCAAAGAACTCCGGGGAAACTGGGATAGAACATTTTACATTATAAGTAGAACCCTGGGAGCCAGAGGTGAATACAAGTTTATCTGCAGAGCTCCGCTGCAGGGCTGATCTGGGTCTGGAAGAAATGGATGAGAGCCAGTGGATGAAATTCACTAATACTAGACATCTGAGTCCTCTAGTAATGTATAAATATCCTAACTATTGTTTGTTGTCATCTCGTTCTTCTTTTATAACCTATGTTTTAACTGGAACTTTTAGCACTGCAGTTTTGTTGTTTTGCTTTCTTCTACCACTTCCCTATGGCTCATCAGCTTGACTGTGCCTTTGTCTCCATTATTTTTGGTTTACTTCCACTTGGCACTTCTTTTATTTATGGTTGTCACATAAAGCATCTAACCATGGTTTTTCTTTGTTTTGCTTTCTTTTGTAATAAGCTTTCCACACTTGGTTGAAAGGCATATTGTCAATTGCATTTTTTTCTCAAAACAACTAACTTTGGACTAAATATATTAAACTATTTTAAAAGCCATTTCTTTTGCAG
Seq C2 exon
ATATTGGTGAATGAACTTTGCTAAGTATGGATTCAGGCGGTGGAAGTCTTGGATTGCACACGCCAGACTCTAGAATGGCCCATACCATGATTATGCAAGATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147180-ZNF711:NM_021998:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.412
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAAGAGAGCGTTTTCCCAAAGA
R:
AATCTTGCATAATCATGGTATGGGC
Band lengths:
222-1746
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)