RnoINT0168619 @ rn6
Intron Retention
Gene
ENSRNOG00000022391 | Zfp711
Description
zinc finger protein 711 [Source:RGD Symbol;Acc:1562768]
Coordinates
chrX:84064427-84066151:+
Coord C1 exon
chrX:84064427-84064573
Coord A exon
chrX:84064574-84066046
Coord C2 exon
chrX:84066047-84066151
Length
1473 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATT
5' ss Score
5.88
3' ss Seq
TCAACCCATTTATTTTACAGGTC
3' ss Score
10.24
Exon sequences
Seq C1 exon
AAGTATCTAATTTCCATTTCCATAATAGGTAAAGACCGTTTTCCCAAGGAAAATGCATAGTTTTGAAGGAAAAAAAAAAGAAATTTTGCAAAGTTTACTTTAGAATCCATAAGAAAACCTACAGTTTCTTCAGCTCACTTGTAAAAG
Seq A exon
GTGATTAACAAATTATTCTTTCCTTCAGTAATTACATAAAAAGTTAAACCACAGAATGGCATTTATAATTGTTGCATTAGTTATCTGATAAAGAATGCAAATGATACAATTTTAGTCCACATAGTATAGTCTTAAGTCTCAAAAATAAATAATTGTGGTATTTTTATTTAAATATAAGGATATACAATTTAATTAATGTGAACTTCATTGGCCTTTTGTCCTCATCTTGGATGACTGCAAGTCAGAAAGCATACTAATTTGAAAGAAAGGCAAAATACAGCTAAGAAGTCTCTTCCAATAATTTTGCTCTCACACAGTTTGCCTAATTATCTTGATACTTAGACATAATTATCCACTGATAATAGCATATTCTCTGTGTCCAAAGTATACAGCTCAAATATTTAATAAAGAGAACTCCAAATTCTTCTGCCTGTTCCGTGGCTGTTGCTTTACAGCAGCAGGAGGAAAAGCTTAGCATGCCCTAGTATTTAAGAACTTATTTTGTGTGTCCTTGGTCTAAAATTTTCATTAAGGACATACCTTTGTGTGGTATGGGTCAATATAACAAACACCTCTGAGTAACAGTAAGATAAATACATCTACAAATACACACTTTTTTATTGTTTGATTAGAATCTTTTGTTGCTAGGGTAATGCACATCAGATATGCAATTATAAGTAATATATTGAGTGACAACCTCTGGCTTTCTCTTGCATATCGCTTGGTTGCCATATTATAAGAATGAAACAGGTTCAGCTATTTAAAAATTTCCATAAGAATAGCATTATTTTATTAACATTACTGAAATATCAGTGTACAATTCTAAATATTTGTATATGGTTGATCTTATCTTTACCATATTTAGGAAGCAGTCATGTTTCATGCGTCCTCAAAACTCTGAGACAAGAGAATGTAGTAGAGTGAGGCCAGAAGTCCTTACTGGTTCAAAGAACTCCGGGGAAACTTGTGATAGAACATTTTGCATTATAAGTAGAACCCCAGGAACCAGAGGTGAATGCAATATCTGCAGAGCTCCGCTGCAGGGCTGATCTGGTTCTGGAAGAAATGGATGAGAGCTACTGGATGAAATTCACTAATACTAAACACCTGAGTCCTCTAGTAATGTATAAATATCACAACTATTAATCTGTTGTCATCTTTTTATTTATTAAGTATAATTTAACTGGACCTCAGTCTTGCAGTTTTGTTCTTTTGCTTGTTTTTTAAGTCATATTCCTATGGCTCTTTACCATAACTGTGCCTCATTTTCTGTTACCTTGGCTTTACATCCACCTGCCCCTTTTACATACGGTTCTCACGTAAAGCATCTGAGCAGTTTTGAATTTTTTCTTTTCTTTTGTAATGAGCTTTGCATACCTGGTTGAAAGGCATATTTTCTATTGTATTTTTTCTCAAAACAACTAACTTGAAATAAATGCATTTAAACTCCTTTTCAACCCATTTATTTTACAG
Seq C2 exon
GTCCCTGTGAATGAGCTTTGCTAAGGATGGATTCAGGTGGTGGAAGTCTTGGATTGCACACTTCAGATGCTAGAATGGCTCATACTATGATTATGCAGGATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022391:ENSRNOT00000046364:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.269
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAAAGACCGTTTTCCCAAGGA
R:
AATCCTGCATAATCATAGTATGAGCC
Band lengths:
222-1695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]