GgaINT1030630 @ galGal4
Intron Retention
Gene
ENSGALG00000006929 | ZNF6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHJ7]
Coordinates
chr4:8674169-8676187:-
Coord C1 exon
chr4:8675895-8676187
Coord A exon
chr4:8674274-8675894
Coord C2 exon
chr4:8674169-8674273
Length
1621 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
3' ss Seq
TTCTGATTTTGCTTTTGCAGTTA
3' ss Score
8.71
Exon sequences
Seq C1 exon
ATACATTCGTCTTTTTCCCTCTCTAAGAATTTGCATTGTAGATTTCAAGACAATTTGAGACAAGTAGATTTCAACTGTGCTGCGGGGAAAAAGTGTTAAAAGGGTGATGCTGACTCTGGGTGATAACAGTTCTTTGGTTCTTTTGTGTCCTCAGTTAAGTTGGAGCCTCCCTGGGGTGGAACGGTGACTGTTGCTTGAAATCTCCATGTTTGCGGGCTGCTTCCTCACCTGAGGATTTCAAGAGTGTGAAAGAATAACCTCTGCTCAGTTCCTTCCTTGATAATGAAGATACA
Seq A exon
GTAAGCATGGATCGCCCTTTCCACATTTTTATTTTATCTGCTTAAGATTGGTTGTTACTGTTTTGTATTTCTTTGCATTGAACTGGGAATCAGAAGCCCCTGAGCATTAAAGAGCCAAAGTAACAAAGCAGGTGTGAAAAACAAAAGCGAGGAAGCTAAAGATGTAACAGCAGGAATTTTCCAACCGGTCAGTGGGTCTGCTCTATCAAAAGCTGTACAGGACTGTTTTTACACCAGAGGGATGTTGCAGATGGCTTTCTCCTGGCTGCAGAAATGAGGTGGCACAGAAGGGATAGCGCTTTGAAGATCAGATTTCTAAAATAATGAGATAATTTTGTGAAAGTCATCAACCAACGTGGATAGCGCTGGGCCGGTGAATGGAGATGCTGGTGCAGAAGTCAGGTCAGCACTGTTGTTTCTTCTTCAAAGCCCTGTGGCAGTGGAGATGCTGCAGTGCTGTTTCTTACACAGGGCTCCTGCTGCTGCACTGGGTAGCTTTGCACTGTGCGTGCACATCTAACTGCACATGGCTGCAATCTTCTGCTAGGTCTTGTGTTGGTCTGTTTTTTAATGGTACAGAGGGGCTCATGCACAGCCACTGAAAATCTGCTTCAGCACTTCTGTTCTCGTAAATCTGGTGCACAGGGCAGCTTTTTTCAGAACTTAACTGCAGTGTAATGTGTTTAATGAAATCTACACATGAAAAAATTGATACAGGTTTGAGATAGCTGATAGATAGAAAATCGTGAAAGAATCTGAACAACTGCTTCTCTCGGTGTAGCTCTCTGCTTTCCTCGGTGCACTCTGCCCCATGCAGCCGTCTTGGCCAGCCCTGATAATTTGTTGAAAGGGTATGGGGTAGAGCACAGGTGGTTCTTTGTGCGTGGCTGCTGGTGCAGGTTGGTAGGGTAAGGCATGAGGGTGGTCATCCTGCTCAGGTGACTTCTGATTATTGCTTCTCCACACTGTCAGCTGTGGTTTATTTCCAGTAAAGGTAACAGTCTTCATGGCAAATTTCTGCTTCTGGATAGTAGTTACACCTAATCAGGTTTATTGCTTTGTTAAATGCATTACATGTTTTGTTAGGGTGGTGTGATGCTACTGCTAGTATTGCTTGTGAATGTGAGCTGTTACTCTATGGAGAATGACCTCATGACACTGCAAAGCTTCATATTCAGTTTGTGGTGGGGAAATGGAAGGTTGTGACATTTCTTGTACTTACTGCTCCTAGAAGTAAAGTCTAAGTCTGTTCCTCTACATGTTGAAGATGAGCAAAAAGTACTTCGTGTTTAATTACACAGATTACAAACAGAACTGTTCTGGGCCAGCCAGTAACCAGAGATTTACATAGAAAAAGGACTATTAACTGTTTGATTTCGCTTGCATGAATAGTTCTTTTGAGTACTGCATGATTATTTACAGATGGAAACATTTGCAGGATATTAGGTCACAAAGCATAAAGCTGTGGGAAGAAAGCAAAGTGAGTTGTATGAAGTGCTGCTTGTTTTTTATTGAACTTGTGGATAAATATTTTTCTGTTAGTCAGTGTGAGACAGGAATACAGTAAAGCTGACGAACACAATGGTGCTGTGGTTAACAAATTCTGATTTTGCTTTTGCAG
Seq C2 exon
TTATTTGTGAATGAATTTAACTGAATATGGATCCGGGTGGTGGAAGTCTTGGATTGCAAACACAAGAATCCAAAATGCCTCACGCCATGATTATGCAGGACTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006929:ENSGALT00000011226:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.563
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCGTCTTTTTCCCTCTCT
R:
CAAGACTTCCACCACCCGGAT
Band lengths:
342-1963
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]