DreINT0181632 @ danRer10
Intron Retention
Gene
ENSDARG00000071868 | znf711
Description
zinc finger protein 711 [Source:ZFIN;Acc:ZDB-GENE-081107-49]
Coordinates
chr14:11703890-11706412:-
Coord C1 exon
chr14:11706329-11706412
Coord A exon
chr14:11703988-11706328
Coord C2 exon
chr14:11703890-11703987
Length
2341 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
ATATATTTTTTCTTTTACAGTGC
3' ss Score
9.99
Exon sequences
Seq C1 exon
ACATTCTCCTTCCTGATGAGAGCTTCAGGTTTTCTTAAAATTTGTGACACTTTCACGTGAAAGGAACTACTGTCAAATGTGAAG
Seq A exon
GTTTGTTGGACAGCATTACAAGCTTTTCTTGTTTTACTTGCAGAGCCATGTTTAAGCTAAATTTAAAAGAAATCTTTTTGAAATATGACTCAAGTGGTTATTAACAGTTCTAAATATGAGATATCAGAAATGTGATTGAAGTAGAATTTTTGTCTAGTCCTGTATGCACAAATAAAGTTATGGAGGGAAGCAGTGAGTGACTAAACATTTGTAAAATATTGATGATTACATGTTTGTTAGTTGGTGGTTTGTTAATGGCTAAAAACAAAAAAAAAATCTGTTTTAGATAGTCATTTACATATGTCGTCTAGTTTAGATATGTCGATGCTGTATACTAAGTCTGATTTTCTGCATAGAGCAGTGATGTGGGGCTACCTGTTCGACAATGGAAATTTAGCATGATTTTGGGCTCACTGCTTGAGCTCATTAGTCTGACTGTGGTTATTGATATCTGATGATAAGGCTTTTAATTTATAACACCAAAGCATTTCTCACACTTTCTCTCATTCATGTTCTTCGCATAATAAAACAGAAAATGAAATGTGTTGCAGGTGCTTTTGAAAACATTTGTGCCATTCCAGCTTCAATTCTTACAGCTCGTACGCATCTGCTTTTTGCTTGCTCTTAACATCAGCATTTTTTTATATTGTTTTTCCACATTCAAACCAATCCAAGCAATTTTTACCCACATTGAGCAGAGTCAAATCACCCCCCTGACGTTAGATGGCACTTTGGAAGTCATCAAAAAAAAGTGAAACTCTCATAATATACCCTTCCATACATAACTCCCTCCTGCCAAAAAATTATTGTAGTTATGTTTATCATATAGCTTTTGTGTTCAAACACCAATTAAAAAAAAAAAAAAGCAGCTTCACAGTCAACTTTCATCAATGCATCCACCTATTTTGGGATATGTGCATAAAAAATGGTTGATAGAAATGCTAAGATGCACATAAATTTTAAAAATGCGAATAAAAAAACCTATGCGCATAACTGCGTAGGATAAATGTTTTATTTGATAAGAAAAGATGTGCATAAACTACGATGCAAACACTTTTACTAAACAAATTCTAGTATGCGCATTAAAAAAGTCATGTGATTTTGTTATAAGAGATCATGTGGTGATAAAAATGTGTGTTAATGGACAAACCAGCAGGCTGAGCACATTGTAAATCTGAAATGTTATTTTGGTCATTCTAAAACGCCTTAATCGTTTTAGTATTAGTGTTATTAAATTAATGACTTTCTGAATTGTCAAGATCGTCTGTGCTCAACATCTCATACCTTCAAATGCCACCACGCGTTCATTGCAAGTCAGCATTGTCTTTTGAGGCGCAAGTAATTTTATTAAATAAAGAAAAGATTCACGCAGCTTCTCCTACCTCAGCAAATTCCGTTTTTATTTTTTGATGTTTGGCACCAGTTAATCGGGAAGTGATGATTTTGTTCCTCTTGACTCATTGGATGGAAATGTTGCTTTATTTGCATGTTTTTTATGTGATAGTCCAGTTTTGCACATAAATGTAATTCACAACTTTGAATTAAAAAATAGCTTGTGAAACTGTGATCGCCTAGACCGTTTTGTGCTTGAGCGCCTCCAAGTCATGTGTACTATAACATCGGCAGCTCCAGGCACATGAACATAAGTGCTAATCTCATTGGAAGAGCAGCTTCGGGAATATTTTTTTTTTTATATAACGCTTACACCTGCTGTTTTGTATGTTGGTGTGCATGAACACATTGCAATACCCCGAGCCAAAAGAGATTCATTCAGTCATTCATTTTCTTTTCGGCTTAATCCCTTTATTAATCTGGGGTCGCTACAGTGGAATAAGCCGCCAATTTATCCAGCATATTTTTTTACACAGCGGATACCCTTCCTGCTGCAAATCATCACTGGGAAACATCCATACACACTCATTCTCACGCATACGGACAATTTAGCTTACCCATTTCACCTATACCAAATGTCTCTGGACTGTAGGGGAAACCGGAGCACCCGGAGGAAACCCACGCCAACGCAGGGAGAATGTGCAATTTTTACAAAGAAACCCCAGCTGAGGCTTGAACCAGCAACCTTCTTACTGTTAGGCAATCGTGCTACCCACTGTGCTGCCCCGAAAAGAGATTTACAATAAAAAAGTACTTTAAGCATAATATCCCCATTTAATTACATTTTAGATTTTTTTTGTCATTCATCAGTGCAGAATTATCTCATCAGAATTATGATGATTCAGAATAATTCTCAGCTTAATCCCGATACTTGCATGAAAATATTATAGTCCACAGCTCTAATCCTCATATAGCAGTAATTAAGTATTATATATTTTTTCTTTTACAG
Seq C2 exon
TGCTGTAGAACTGTCACAGATTATGGATCAAGGTGGAGGGATCCTGGAGCTTCACAAGGACTTGAAGATGCCCCATACAATGATAATGCCAGATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071868:ENSDART00000106654:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]