RnoEX0101682 @ rn6
Exon Skipping
Gene
ENSRNOG00000022391 | Zfp711
Description
zinc finger protein 711 [Source:RGD Symbol;Acc:1562768]
Coordinates
chrX:84064427-84066151:+
Coord C1 exon
chrX:84064427-84064573
Coord A exon
chrX:84065439-84065692
Coord C2 exon
chrX:84066047-84066151
Length
254 bp
Sequences
Splice sites
3' ss Seq
CTTATCTTTACCATATTTAGGAA
3' ss Score
7.79
5' ss Seq
CTAGTAATG
5' ss Score
-2.75
Exon sequences
Seq C1 exon
AAGTATCTAATTTCCATTTCCATAATAGGTAAAGACCGTTTTCCCAAGGAAAATGCATAGTTTTGAAGGAAAAAAAAAAGAAATTTTGCAAAGTTTACTTTAGAATCCATAAGAAAACCTACAGTTTCTTCAGCTCACTTGTAAAAG
Seq A exon
GAAGCAGTCATGTTTCATGCGTCCTCAAAACTCTGAGACAAGAGAATGTAGTAGAGTGAGGCCAGAAGTCCTTACTGGTTCAAAGAACTCCGGGGAAACTTGTGATAGAACATTTTGCATTATAAGTAGAACCCCAGGAACCAGAGGTGAATGCAATATCTGCAGAGCTCCGCTGCAGGGCTGATCTGGTTCTGGAAGAAATGGATGAGAGCTACTGGATGAAATTCACTAATACTAAACACCTGAGTCCTCTA
Seq C2 exon
GTCCCTGTGAATGAGCTTTGCTAAGGATGGATTCAGGTGGTGGAAGTCTTGGATTGCACACTTCAGATGCTAGAATGGCTCATACTATGATTATGCAGGATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022391_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.269
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAAAGACCGTTTTCCCAAGGA
R:
TCCTGCATAATCATAGTATGAGCCA
Band lengths:
220-474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]