MmuEX0053577 @ mm9
Exon Skipping
Gene
ENSMUSG00000025529 | Zfp711
Description
zinc finger protein 711 [Source:MGI Symbol;Acc:MGI:3045342]
Coordinates
chrX:109716291-109717981:+
Coord C1 exon
chrX:109716291-109716391
Coord A exon
chrX:109717269-109717522
Coord C2 exon
chrX:109717877-109717981
Length
254 bp
Sequences
Splice sites
3' ss Seq
CTTATCTTTACCATATTTAGGAA
3' ss Score
7.79
5' ss Seq
CTAGTAATG
5' ss Score
-2.75
Exon sequences
Seq C1 exon
AAAGAAAATGAATTGTTTTGAAGGAAAAAAATAAGAAATTTTGCAAAAATTACTTTATAATCCTTAAGAAAATCTTCATTTCTTCAATCTACTTGTAAAAG
Seq A exon
GAAGCAGTCATGTTTCATGAGTCCTCAAAACTGTGAGACAAGAGAATGTAGTAGAGTGAGGCCAGAAGTCCCTACTGGTTCAAAGAACTCCGGGGAAACTTGTGATAGAACATTTTGCATTATAAGTAGAGCCCCAGGAACCAGAGGTGAATACAATATCTGCAGAGCTCCGCTGCAGGGCTGATCTGGTTCTGGAAGAAATGGATCAGAGCTACTGGATGAAATTCACTAATGCTAGACACCTGAGTCCTCTA
Seq C2 exon
ATACATGTGAATGAGCTTTGCTAAGGATGGAGTCAGGTGGTGGAAGTCTTGGATTGCACACTTCAGATGCTAGAATGGCTCATACCATGATTATGCAGGATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025529-'1-2,'1-1,2-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.370
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: