RnoEX0101696 @ rn6
Exon Skipping
Gene
ENSRNOG00000015322 | Zfp78
Description
zinc finger protein 78 [Source:RGD Symbol;Acc:1586242]
Coordinates
chr1:71184109-71189269:-
Coord C1 exon
chr1:71189143-71189269
Coord A exon
chr1:71187260-71187355
Coord C2 exon
chr1:71184109-71184792
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTTTTAAATGCAGGAG
3' ss Score
7.88
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GACGCAGTGACATTCAAAGATGTTGCCATAGACTTTTCTCAGGAGGAATGGGAGTGGCTGAATCCTGCTCAGAGGAGTTTGTACAGGAACGTGGTGCTGGAGAACTATCGGAACTTGGTTTCAGTGG
Seq A exon
GAGCTTGCATTTCCAAACCATCTCTAATCTCTTTATTGGAGCATGGGAAGGAGCCTTGGGAGGTGAAGGGTCAGGTGACAAGAAGCCCGGTACAAG
Seq C2 exon
GTGGAGAATCTGTACAGAAGACACAAGAATTATCTCTGAGGCAATTGGCTTTTGATGCCGTGTCAGTGGAGAACATTGCAAGCCTCGGTTGTGAGTCTCCCACTTCTGGAAAAAAGCAGAAATGCAAAGACCTTTTTGATAGACAGAAGATGAGTCAGGAAATATTTAACCTGAAAGAAACAGTCACTCACAAAGGAACTCACACTAAAGAAATAGGCTACAAACACACGGAATCTTTCAAATCTGTCCATCTGGATAGTGTAGAAGAGAATATTTATAGTCACAAGACAAATAAGAAAAGCTTCTCCAAAAATCCCAAGGTACGGAAATACAAGAAAATCTGGGCAGGGAAGAACATTTTTAAATGTAACGAATGCGAGAAAACCTTCACCCACAGCTCATCTGTGACTGTGCATCAGAGAATTCACACGGGCGAAAAGCCGTATAAATGCACAGTCTGTGGAAAGGCCTTCAAGCAGAGCCACCACCTGGCTCAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015322_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.303 C2=0.116
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=11.4),PF134651=zf-H2C2_2=WD(100=11.4),PF134651=zf-H2C2_2=WD(100=11.4),PF134651=zf-H2C2_2=PU(38.5=4.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCTGAATCCTGCTCAGA
R:
AAGTGGGAGACTCACAACCGA
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]