RnoEX0101697 @ rn6
Exon Skipping
Gene
ENSRNOG00000018936 | Zfp780b-ps1
Description
zinc finger protein 780B, pseudogene 1 [Source:RGD Symbol;Acc:2321719]
Coordinates
chr1:84889226-84891950:-
Coord C1 exon
chr1:84891852-84891950
Coord A exon
chr1:84890792-84890919
Coord C2 exon
chr1:84889226-84889326
Length
128 bp
Sequences
Splice sites
3' ss Seq
TATGTATTCCTCTCCTAAAGGAC
3' ss Score
7.54
5' ss Seq
GAGGTAGAG
5' ss Score
4.86
Exon sequences
Seq C1 exon
TGGGAAGTTGCCTTTCTAAGCCACATCTGATCACCTTACTAGAGCAGGAGAAAGAGCCCTGGATGGCTGTGAAGGAAGAAACAGACAGGCCGAGCCCAG
Seq A exon
GACATGTAGGCTGTTTCCAATTCCTGCTATGATGAATAGAGTGCAGCAAACATCTCTGAGCAAGCGTCTCTGTGAGAAGATGATGCATCCTTGGGGTATATGCCCGAGTGCTATATATGGATCTTGAG
Seq C2 exon
ATAAAAGAGAAAGGATAGAGGAAACAAGAAGAGCTTTGTGGTTTCTTCTGGATTGAGCAATTGCTACTGATTCATATTTGGTGTTTTGCTAGTGAACTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018936-'6-5,'6-4,7-5
Average complexity
C1
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000051665fB17013
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGTTGCCTTTCTAAGCCA
R:
TCCAGTTCACTAGCAAAACACCA
Band lengths:
199-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]