RnoEX0101698 @ rn6
Exon Skipping
Gene
ENSRNOG00000018936 | Zfp780b-ps1
Description
zinc finger protein 780B, pseudogene 1 [Source:RGD Symbol;Acc:2321719]
Coordinates
chr1:84879973-84891950:-
Coord C1 exon
chr1:84891852-84891950
Coord A exon
chr1:84882597-84882730
Coord C2 exon
chr1:84879973-84882137
Length
134 bp
Sequences
Splice sites
3' ss Seq
CTTGCAAACCTCATCGACAGCAA
3' ss Score
2.76
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TGGGAAGTTGCCTTTCTAAGCCACATCTGATCACCTTACTAGAGCAGGAGAAAGAGCCCTGGATGGCTGTGAAGGAAGAAACAGACAGGCCGAGCCCAG
Seq A exon
CAACCGGCAGCAGCCACACCCTCTCCAGATTCCAGCATTTCCCTACACTCTCAACCGTCCCCAGAATTCCAAACATCAGTCACTTGCAGAAACTATCTGCAGCTGGAAAAACCAAGCCCCTGCCAGAGTACAAG
Seq C2 exon
AGTTGGAGACAGGTTATGATGCTGAAAATATATCTCCAGAAAATCCTATTAATAATGGAAAGTTTCTCAAACAGAGCATAAAGCAATTAAGTAGAACTTTTGACTTCAAGGACTCTAGTTCTAGTAATGGCCCCAACTATAGTGCATTCCATGGACTAAAGGATTGTCAAGGAGATGCTGATCAACAGATTACTAACAAGGAAGAAATGCCTCCTTATACCTGCCAGACTCTTGCTCACAATATAGAAAGAGCATATGAATGTAAGGAGTGTGGGAAGTGCTTGGGTTGTAGGTCAACTCTCACTCAGCATCAGACTATTCATACTGGAGAGAAACCCTATGAATGTAAGGAGTGTGGGAAGGCCTTCAGACTCCCCCAACAGCTTACAAGACATCAGAAGTTTCACAGTGGTGAGAAACCTTTCAAGTGCAATGAATGTGGAAAGGCGTTTCATCTTCCTGACCTGCTCAAGTACCATAAAACCATCCATACAGGTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018936_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.133 C2=0.043
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.6),PF0009621=zf-C2H2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6)
Main Inclusion Isoform:
ENSRNOT00000051665fB17014
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAAACAGACAGGCCGAG
R:
TCTGGCAGGTATAAGGAGGCA
Band lengths:
254-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]