RnoEX0101701 @ rn6
Exon Skipping
Gene
ENSRNOG00000015456 | Zfp787
Description
zinc finger protein 787 [Source:RGD Symbol;Acc:1310536]
Coordinates
chr1:71434819-71447195:+
Coord C1 exon
chr1:71434819-71434914
Coord A exon
chr1:71435133-71435272
Coord C2 exon
chr1:71445486-71447195
Length
140 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTCTCATGTCTGCAGCTA
3' ss Score
9.45
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
CCAACAGGGACCCAGACATGGAGCTTCGGGAAGAAGCTTGGTCTCCAGGGCCACTGGATTCTGAGGACCAGCAGATGGCCAGTCATGAGAACCCAG
Seq A exon
CTAGCTATTGGTGAGCACCCCTTTTGTGCCCCATATCCTGCTTTGGTTCCATAAGTACCAATTCTGCTTCATGGTTGTTCCTCACGTGGTGGGCCTACAAACCTAGGATCTGGAAGTTGTAATGAACAAGGGAAGGACTG
Seq C2 exon
TGGACATCCTCATCATGGATGACGACGACGTCCCAAGCTGGCCCCCGAACAAGCTTTCCCCACCTCAGTCTGCACCTCCTCCTGGGCCCCCACCCCGGCCGCGGCCACCTGCACCCTACATCTGCACTGAGTGTGGCAAAAGCTTCAGCCACTGGTCGAAGCTGACGCGGCACCAACGCACGCACACGGGCGAGCGGCCTAACGCCTGTACCGACTGCGGCAAGACCTTCTCGCAGAGCTCGCACCTGGTGCAGCACCGGCGCATCCACACAGGCGAGAAGCCGTACGCCTGCTCTGAATGCGGCAAGCGCTTTAGCTGGAGCTCAAACCTCATGCAGCACCAGCGCATCCACACAGGCGAGAAACCTTATACTTGCCCCGACTGCGGCCGCAGCTTCACACAGAGCAAGAGCCTGGCCAAGCACCGGCGCTCCCACAGTGGTCTAAAGCCCTTCGTGTGCCCGCGCTGCGGCAGAGGCTTCAGCCAGCCTAAGAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015456_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.349
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=7.0),PF097235=Zn-ribbon_8=WD(100=12.4),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3)
Main Inclusion Isoform:
ENSRNOT00000059069fB17015
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACATGGAGCTTCGGGAAG
R:
CGACCAGTGGCTGAAGCTTTT
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]