RnoEX0101708 @ rn6
Exon Skipping
Gene
ENSRNOG00000014331 | Zfp810
Description
zinc finger protein 810 [Source:MGI Symbol;Acc:MGI:2384563]
Coordinates
chr8:23275936-23282989:-
Coord C1 exon
chr8:23282723-23282989
Coord A exon
chr8:23280749-23280855
Coord C2 exon
chr8:23275936-23279470
Length
107 bp
Sequences
Splice sites
3' ss Seq
GAATCTTTAAATATTTTCAGGTA
3' ss Score
6.7
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAGGAGCAGGAGGAGGAGGTGTGAGGAGGAGCAGGAGGAGGAGGAGGAGGAGAGAAAGACAGAAGACAGTTGCTGAGTCATTCACCATCGTGTAGTTCCCAAGGTGTAACTGTTGCCTTCTAGCGTAGATTATCAGTAGATGGACACAATCTATACATTATGTTTCTTTCACAGGGCACTGCATGGTCAAACCTGAGTTGATCTTAAACTTAGAACAGGGACTTGGACCAGTGAGTACAGCAGGAACCTCGGTCTGGAACCTCTCAG
Seq A exon
GTATCGACAAAGGGAATAGCCTGGTTGATACCATCCAGGAAAATGATAGCAGACATTTCTGGCAAATTGAAATCAACAGCCGTACATCAAATGAAGAACTGGTTGAA
Seq C2 exon
GCAGAACTGAAGATTCATGAGGAAATCCATCAAGGGACAAAGTCCTATGAATGTGAAGTATGTTTGGAAGCATTTTATCTGAAGCCACAGTATAGCACTGACCAGAGATACCACACATGCGAGAATCCATACAACTGTAAAAAATTTAGAGGGGCTTTCTATTCTAAGTCGACCTTCAGACCGTGTCAGAGGCTCGAGAGAGGTGAGAAACCCCACGCATGTATAGAGTGTGGGAAATCCTTCTATTGCAAGTCTCACCTCACTGTGCATCAGAGGACCCACACAGGGGAGAAGCCCTACGAATGTAATGACTGCAAGAAGGCTTTCTACAGCAGGTCCCAGCTCAATGTGCATCTGAGAACTCATACAGGTGAGAAACCCTATGAATGTAAGGAGTGCAGGAAGACTTTCTACCGCAATTCTGACCTCACAGTGCATCAGAGGACTCACACAGGCGAGAAGCCCTACGAATGCAAAGTGTGCAGTAAAGCCTTCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014331-'4-4,'4-2,5-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4)
Main Skipping Isoform:
ENSRNOT00000082252fB7598
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCAGTGAGTACAGCAGGA
R:
GGGGTTTCTCACCTCTCTCGA
Band lengths:
257-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]