RnoEX0101716 @ rn6
Exon Skipping
Gene
ENSRNOG00000000262 | Zfp821
Description
zinc finger protein 821 [Source:RGD Symbol;Acc:1306674]
Coordinates
chr19:41955393-41958260:-
Coord C1 exon
chr19:41958198-41958260
Coord A exon
chr19:41957502-41957559
Coord C2 exon
chr19:41955393-41955509
Length
58 bp
Sequences
Splice sites
3' ss Seq
ATTTTGCCTTGATCCCTCAGGTG
3' ss Score
9.94
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
ATTCACATCACTCGGATTCGGGCGAGTTTACTTTGCTCCGTGGGAACCTCACCAGAGCTGGAG
Seq A exon
GTGTGAAGTCCCAGGAGGGACCATCTGGTCAGTCCCCCATCGGGCCACTAGGAGGATG
Seq C2 exon
GTCAGCACCTTACAAGGAGGTAGTGACCTGTCCAGGGGTGAAACTGGGAAAGAATCGAACTTGTCTATCAGGGAAACATGTCCCGTAGGAAACAGACAAATCCAAATAAAGTTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000262_MULTIEX2-1/2=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGGCGAGTTTACTTTGCTC
R:
TGTCTGTTTCCTACGGGACATG
Band lengths:
144-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]