RnoEX0101717 @ rn6
Exon Skipping
Gene
ENSRNOG00000000262 | Zfp821
Description
zinc finger protein 821 [Source:RGD Symbol;Acc:1306674]
Coordinates
chr19:41955393-41958260:-
Coord C1 exon
chr19:41958198-41958260
Coord A exon
chr19:41956607-41956723
Coord C2 exon
chr19:41955393-41955509
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTTTTTAATTGAAGGTC
3' ss Score
9.03
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
ATTCACATCACTCGGATTCGGGCGAGTTTACTTTGCTCCGTGGGAACCTCACCAGAGCTGGAG
Seq A exon
GTCTGAAAAGAACTGTGTTTGGTATGCAGATATGCTAGAAGACTGCCCGAGAGCTGCTTCCTTTGCCACTTCCTGTGGAGGCCGGGCTTTGCCATTTGCGGTTTCTTTCTTCTTTTG
Seq C2 exon
GTCAGCACCTTACAAGGAGGTAGTGACCTGTCCAGGGGTGAAACTGGGAAAGAATCGAACTTGTCTATCAGGGAAACATGTCCCGTAGGAAACAGACAAATCCAAATAAAGTTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000262_MULTIEX2-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACATCACTCGGATTCGGG
R:
AGTGAACTTTATTTGGATTTGTCTGT
Band lengths:
179-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]