Special

BtaEX0041562 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus zinc finger protein 821 (ZNF821), mRNA. [Source:RefSeq mRNA;Acc:NM_001038152]
Coordinates
chr18:39352378-39355133:+
Coord C1 exon
chr18:39352378-39352440
Coord A exon
chr18:39353609-39353726
Coord C2 exon
chr18:39355019-39355133
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTAATTAAAGGTC
3' ss Score
8.5
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTACAAACCACTGGGATTCAGGCGAGTTTACTTTGCTCCGTGGGAACTGCACCAGATCTGGAG
Seq A exon
GTCTGAAAAAGAACTGTGTTTGATATGCAGATATGATAGAAGACTGCCTGAAAGCTGCTTCCTTTGCCACTTCCTGTGGAGGCCTGTCTTTGCCATTTGCGGTTTCTTTCTTCTTTTG
Seq C2 exon
GTCGGCACCTTGCAAGGAGGTGGTAACATCCAGTCGTGAAACTGGGAAAAGCCAGAGCTCTTGGATCAGGAAAACATGTCCCGTCGGAAACAGACAAATCCAAATAAAGTTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021438_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact

5' UTR

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=1.000
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGATTCAGGCGAGTTTACT
R:
ACTTTATTTGGATTTGTCTGTTTCCG
Band lengths:
163-281
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development