HsaEX0074407 @ hg38
Exon Skipping
Gene
ENSG00000102984 | ZNF821
Description
zinc finger protein 821 [Source:HGNC Symbol;Acc:HGNC:28043]
Coordinates
chr16:71880448-71883273:-
Coord C1 exon
chr16:71883211-71883273
Coord A exon
chr16:71881317-71881404
Coord C2 exon
chr16:71880448-71880548
Length
88 bp
Sequences
Splice sites
3' ss Seq
GAACTGTGTTTGATATGCAGATA
3' ss Score
6.36
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
ATACAGATCACTTGGATTCAGTCGAGTTTGCTTTGCTCCGTGGGAACTGCACCAGAGCTGGAG
Seq A exon
ATATGCTAGAAGACTGCCTGAAAGCTGCTTCCTTTGCCACTTCCTGTGGAGGCCTGTCTTTGCCATTTGCGGTTTCTTTATTCTTTTG
Seq C2 exon
ATGCCTATTTGAGACATTTTCTGTCTCGCAGGGATGTGATGCCTTTGCTACCTCTAGGCAAGATAACATCATGAAAAATCCGCTGGTGTAGACTGCAGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102984-'6-19,'6-18,7-19
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATCACTTGGATTCAGTCGA
R:
CTGCAGTCTACACCAGCGGAT
Band lengths:
159-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development