HsaEX0074407 @ hg19
Exon Skipping
Gene
ENSG00000102984 | ZNF821
Description
zinc finger protein 821 [Source:HGNC Symbol;Acc:28043]
Coordinates
chr16:71913810-71917176:-
Coord C1 exon
chr16:71917114-71917176
Coord A exon
chr16:71915220-71915337
Coord C2 exon
chr16:71913810-71913926
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTTTAATTAAAGGTC
3' ss Score
7.9
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
ATACAGATCACTTGGATTCAGTCGAGTTTGCTTTGCTCCGTGGGAACTGCACCAGAGCTGGAG
Seq A exon
GTCTGAAAAAGAACTGTGTTTGATATGCAGATATGCTAGAAGACTGCCTGAAAGCTGCTTCCTTTGCCACTTCCTGTGGAGGCCTGTCTTTGCCATTTGCGGTTTCTTTATTCTTTTG
Seq C2 exon
GTTAGCATCTTGCAAGGAGGTAGTAACATATCCAGTCGTGAAACTGGGAAAGACCAGAGCTCTTGCATCAGGGAAACATGTCCCGTCGGAAACAGACAAATCCAAATAAAGTTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102984_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATCACTTGGATTCAGTCGA
R:
AGTGAACTTTATTTGGATTTGTCTGT
Band lengths:
178-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)