RnoEX0101775 @ rn6
Exon Skipping
Gene
ENSRNOG00000043223 | Zfp949
Description
zinc finger protein 949 [Source:RGD Symbol;Acc:2302581]
Coordinates
chr8:96363721-96377229:+
Coord C1 exon
chr8:96363721-96363891
Coord A exon
chr8:96376784-96376910
Coord C2 exon
chr8:96377137-96377229
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAAGAAATGTGCTGTTACAGGAG
3' ss Score
3.82
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CCAATTGTACAGTGTTTTGAGTGGAGAATCTAGGACCAAGCCATGAATATCCTCTCACTCTCATGACTCTAAGAGATTCTCCTTCTCTCAAGTGTATCCCAGAATCCTCTACGTGTTTCCAAGGGCAAAACCAAAACCAAGCAACTTAGAAACATCATGAATGAATATGTG
Seq A exon
GAGTTGGTGTCATTTGAGGATGTCACTGTGGATTTTACCTGGGAGGAGTGGCAGAATCTCAGTGATGCTCAGAGGATACTGTACAGGAATGTGATGCTGGAGACGTATAGCAGCCTCCTGTCACTGG
Seq C2 exon
GGCAATGTATCCCTAAACCTGAGTTGATCTTCAAGTTGGAACAGGGAGAGGAACCATGGGCAGCAGAAGAACCTGCAAACAAGACTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043223_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAATCTAGGACCAAGCCA
R:
TGGCAGAGTCTTGTTTGCAGG
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]