RnoEX0101823 @ rn6
Exon Skipping
Gene
ENSRNOG00000005624 | Zfx
Description
zinc finger protein X-linked [Source:RGD Symbol;Acc:1562664]
Coordinates
chrX:63182296-63204530:-
Coord C1 exon
chrX:63204191-63204530
Coord A exon
chrX:63195505-63195572
Coord C2 exon
chrX:63182296-63182385
Length
68 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTGTCTTTCTACAGGTG
3' ss Score
14.26
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
ACGGAAACTCAGGCCGCCCGAGACCCCGCCGCAGCGAGGCCACGGGGCTCCCCGGTTGCGGGGCGTGAACGGTGCCAACCCGGGGCGTCAGAGGGACCCACCGGGCGGAGGAGGGGGCCCATCTATCCTTCCGCATTTTCCTGGGTCTCTCTCCCCGGCGGTGACGTGACGTGCTGACGGCGGGCCCGTGCCGGGGAGCTGGGCCGCTTTTTGTCAGCTCCGAGCTCGGCCCCTCCTCCCTCCCTCCGCCCGCCCCACCAGCCGGAGCCCGGCCCAGTGCTCCAGAGAAAGGCCGGCCTGCAGCACCCGCCACCGTCGCCGACCGCCGCACGACTGTCCG
Seq A exon
GTGCGTATAACTGTGCCCAGCTAACCTTGTAAGATGAATTGGGGAGCATTCCCTCTTTTTTGAAACAG
Seq C2 exon
GTGTTCTGGCTGATGAGAATTTAAAGGCCATGGATGAAGATGGACTTGAATTACAACCACAAGCACCAAACTCATTTTTTGATGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005624_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.964
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTTTTTGTCAGCTCCGAG
R:
GTCCATCTTCATCCATGGCCT
Band lengths:
182-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]