RnoEX0102159 @ rn6
Exon Skipping
Gene
ENSRNOG00000029678 | Znf354b
Description
zinc finger protein 354B [Source:RGD Symbol;Acc:7562538]
Coordinates
chr10:36411963-36419926:-
Coord C1 exon
chr10:36419676-36419926
Coord A exon
chr10:36417066-36417147
Coord C2 exon
chr10:36411963-36414332
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCACCTTTTCTCCTCTACAGTTT
3' ss Score
10.3
5' ss Seq
CACGTTAGT
5' ss Score
0.44
Exon sequences
Seq C1 exon
CTTGGCCTCTGCCTGACACATCCTGTCACATGACAGGGAGCAGTTTAAGTACCCAGTAGAAGTGTAGCTGGGTTCCCCACACATTTGGAATGCTTGTCCACGTTAAAAAAAGACGGAGTCTTTTTAGTGTTATTGCTAATTTTGTTTGTGATCAGGATTTCCATTTACCAAACCAAAGATGATCTCCGTGCTGCAGCAAGGAGAAGAACCCTGGAAAGCGGAGAAAGAAAGCCATGGATGCTCCTCTCTTG
Seq A exon
TTTGGGCCTTTTCTGCCTTCCTCACAGGATGCTGAGGATGAGATCGTGCATGAAGTGAAGATTTCTTTACCTCCTGTCCCAC
Seq C2 exon
GATGTAATAGCAGTCTTCAAACCACAAAATCAACTCAAACTAAAGAGTCATCATTTCAGGAATTAAAGAGGAAACAACTCAAAAGGGATGAGGACTGGGACTTTACCTCAGGAAAATCCTGCAGACCTGACAACAGTTTTAAAAAACAGAACAAAAATGAAAGCTTACAAATAATTTCTATCACCCATACAAAAATTCTTACTGTAGATAAAAGCCATAAGAATTTTGAGTTTGGTCCAAGTGTCAGCCTGAAGTCAATCAGTAAGCAAAAGATTGCTAGAGAAAAAACACAAAGAAATAGCCTCAAGGAAAATTCAACTTCACTTAATCAACCAAAAATCAAGACATTAGAGAAACGCTTTAAATGTAGTACTTGTGAAAAGGCCTTCATTCACAGCTCATCCCTTCGCAAACATCTGAAAAACCATAGTGGAGAGAGATTATTTCAATGTAAAGACTGTTTGAAAGCTTTCAGCCAAAGTTCCGCTCTTATTCAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029678_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.280 A=0.000 C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF0009621=zf-C2H2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0)
Main Inclusion Isoform:
ENSRNOT00000004902fB17099
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGAGAAAGAAAGCCATGG
R:
ACTGTTGTCAGGTCTGCAGGA
Band lengths:
172-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]